<div dir="ltr">Thanks Antoine for answering<div><br><div>The datasets work fine.</div><div><br></div><div>yes I'm under a loop in order to automate datasets moving/renaing; if I use "h5mv" for a single dataset (whatever it is) that's ok. As said previously, the issue occurs immediately after using the first "h5mv" without closing the file.</div><div><br></div><div>I'm under Linux (Ubuntu); I've ever tested h5copy but it failed as well.</div><div><br></div><div>I'll test your suggestion in using hdf5 package outside Scilab or through "unix_g" ino Scilab</div><div><br></div><div>Paul</div><div><div><br></div><div><br></div></div></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">Le dim. 24 mai 2020 à 14:38, Antoine Monmayrant <<a href="mailto:antoine.monmayrant@laas.fr">antoine.monmayrant@laas.fr</a>> a écrit :<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div>
<p>Hello Paul,</p>
<p><br>
</p>
<p>This is not a solution, but just tests to assert that the problem
does come from scilab and not from your datasets.<br>
</p>
<p>(1) Can you try to use command-line tool h5copy (that comes with
the hdf5-tools pacakge on a Debian/Ubuntu Linux distribution) to
do it outside of scilab?<br>
If you succeed, that might be a bug in h5mv in scilab.<br>
If you are under windows, there might be an equivalent tool, or
you can use WSL if under Windows10.<br>
</p>
<p>(2) I get that you are running this code inside some sort of
loop, right? Can you try to do it step-by-step on one of the file
that fails? By step-by-step I mean either Ctrl+E line by line in
your code or one command at a time in the console. This might help
if it's a race condition bug. I faced similar issues when
manipulating the graphic handle hierarchy within a loop.<br>
</p>
<p>Hope it helps,</p>
<p><br>
</p>
<p>Antoine<br>
</p>
<div>On 24/05/2020 12:22, paul francedixhuit
wrote:<br>
</div>
<blockquote type="cite">
<div dir="ltr">
<div dir="ltr">Hi all
<div><br>
</div>
<div>I'm trying to reorganize my hdf5 file by moving/renaming
dozens of datasets, using mainly h5mv (loops are used to
pass through all groups and datasets)</div>
<div><br>
</div>
<div>My code is typically, where:</div>
<div>
<ul>
<li>Source = the path+name of the original dataset</li>
<li>Destination= the path + the new dataset name</li>
</ul>
</div>
<div>
<pre style="font-family:Monospaced"><span style="color:rgb(50,185,185)">h5flush</span><span style="color:rgb(74,85,219)">(</span><span style="color:rgb(0,0,0)">h5</span><span style="color:rgb(74,85,219)">)</span><span style="color:rgb(0,0,0)">;</span> <span style="color:rgb(100,174,100);font-style:italic"> </span>
<span style="color:rgb(50,185,185)">h5mv</span><span style="color:rgb(74,85,219)">(</span><span style="color:rgb(0,0,0)">h5</span><span style="color:rgb(0,0,0)">,</span> <span style="color:rgb(0,0,0)">Source</span><span style="color:rgb(0,0,0)">,</span> <span style="color:rgb(0,0,0)">h5</span><span style="color:rgb(0,0,0)">,</span> <span style="color:rgb(0,0,0)">Destination</span><span style="color:rgb(74,85,219)">)</span><span style="color:rgb(0,0,0)">;</span></pre>
</div>
<div><br>
</div>
<div>Trouble I'm confront to:</div>
<div>
<ul>
<li>It works only ounce and I do not understand why, even
flushing hdf5 object</li>
<li>I can note that after <i>h5mv</i>, <i>h5flush</i> does
not work anymore</li>
<li>hdf5 object becomes "invalide"</li>
</ul>
</div>
<div>What am I doing wrong?<br>
</div>
<div><br>
</div>
<div>Thanks for any advice</div>
<div><br>
</div>
<div>Paul</div>
</div>
</div>
<br>
<fieldset></fieldset>
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