[Scilab-Dev] undefined reference to `dgeqpf_' et `zgeqpf_' during compilation of scilab on CentOs7

Paul Bignier paul.bignier at scilab-enterprises.com
Fri Feb 10 17:15:07 CET 2017 

Hello Lise,

dgeqpf & zgeqpf seem are deprecated 
<http://www.netlib.org/lapack/lapack-3.6.0.html> in Lapack 3.6+, that 
may be the issue here, could you please try with a less recent version 
<http://www.netlib.org/lapack/>? 3.5.0 should do.

Let us know hos it goes,
Regards,
Paul

On 02/10/2017 04:37 PM, Lebouc Lise (CS SI) wrote:
>
> Hi,
>
> I want to install Scilab 5.5.2 from source on Cent OS 7 with the 
> minimal option and I obtain an error during the compilation step of 
> Scilab.
>
> My option for configure are :
>
> configure --prefix=/install_directory
>
>  --without-gui
>
>  --without-javasci
>
>                 --without-jdk
>
>                 --disable-build-help
>
>                 --disable-build-localization
>
>                 --without-xcos
>
>                 --without-modelica
>
>                 --without-fftw
>
>                 --without-umfpack
>
>                 --without-matio
>
>                 --without-tk
>
>                 --without-openmp
>
>                 --without-arpack-ng
>
>            --with-lapack-library=/install_directory/lapack/3.6.1/lib
>
>  --with-blas-library=/install_directory/lapack/3.6.1/lib
>
> I used lapack 3.6.1. Configure worked well but I got this message 
> during the compilation :
>
> g++ -DHAVE_CONFIG_H -I. -I./modules/core/includes  
> -I./modules/io/includes/ -I./modules/console/includes/ 
> -I./modules/localization/includes/    -DNDEBUG -fno-stack-protector -g 
> -O2 -MT modules/startup/src/c/scilab_bin-mainscic.o -MD -MP -MF 
> modules/startup/src/c/.deps/scilab_bin-mainscic.Tpo -c -o 
> modules/startup/src/c/scilab_bin-mainscic.o `test -f 
> 'modules/startup/src/c/mainscic.cpp' || echo 
> './'`modules/startup/src/c/mainscic.cpp
>
> mv -f modules/startup/src/c/.deps/scilab_bin-mainscic.Tpo 
> modules/startup/src/c/.deps/scilab_bin-mainscic.Po
>
> /bin/sh ./libtool  --tag=CXX   --mode=link g++ -DNDEBUG 
> -fno-stack-protector -g -O2   -static-libstdc++ -static-libgcc 
> -Wl,--no-as-needed -o scilab-bin 
> modules/startup/src/c/scilab_bin-mainscic.o ./modules/libscilab.la 
> ./modules/libscilab-cli.la  -lxml2 -lz -lm -ldl  
> -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 
> -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 
> -L/lib/../lib64 -L/usr/lib/../lib64 
> -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../.. -lpthread -ldl 
> -lcurses -lgfortran -lm -lquadmath 
> ./modules/console/libsciconsole-minimal.la 
> ./modules/jvm/libscijvm-disable.la  -lpthread -ldl -lcurses -lm
>
> libtool: link: g++ -DNDEBUG -fno-stack-protector -g -O2 
> -static-libstdc++ -static-libgcc -Wl,--no-as-needed -o 
> .libs/scilab-bin modules/startup/src/c/scilab_bin-mainscic.o 
> ./modules/.libs/libscilab.so -L/work/logiciels/rh7/lapack/3.6.1/lib 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/.libs/libscilab-cli.so 
> ./modules/.libs/libscilab-cli.so -lcurl 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/functions/.libs/libscifunctions.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/call_scilab/.libs/libscicall_scilab.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/localization/.libs/libscilocalization.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/special_functions/.libs/libscispecial_functions.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/completion/.libs/libscicompletion.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/history_manager/.libs/libscihistory_manager.so 
> -lpcreposix -lpcre 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/hdf5/.libs/libscihdf5.so 
> -lhdf5 -lhdf5_hl 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/statistics/.libs/libscistatistics.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/xml/.libs/libscixml.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/external_objects/.libs/libsciexternal_objects.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/preferences/.libs/libscipreferences-cli.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/gui/.libs/libscigui-disable.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/graphics/.libs/libscigraphics-disable.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/graphic_export/.libs/libscigraphic_export-disable.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/console/.libs/libsciconsole-minimal.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/action_binding/.libs/libsciaction_binding-disable.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/jvm/.libs/libscijvm-disable.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/xcos/.libs/libscixcos-disable.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/graphic_objects/.libs/libscigraphic_objects-disable.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/scinotes/.libs/libsciscinotes-disable.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/ui_data/.libs/libsciui_data-disable.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/history_browser/.libs/libscihistory_browser-disable.so 
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/commons/.libs/libscicommons-disable.so 
> -llapack -lblas -lxml2 -lz -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 
> -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 
> -L/lib/../lib64 -L/usr/lib/../lib64 
> -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../.. -lgfortran 
> -lquadmath ./modules/console/.libs/libsciconsole-minimal.so 
> ./modules/jvm/.libs/libscijvm-disable.so -lpthread -ldl -lcurses -lm 
> -Wl,-rpath -Wl,/work/ADM/hpc/leboucl/INSTALL/rh7/scilab/5.5.2/lib/scilab
>
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/.libs/libscilab-cli.so: 
> undefined reference to `dgeqpf_'
>
> /work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2/modules/.libs/libscilab-cli.so: 
> undefined reference to `zgeqpf_'
>
> collect2: error: ld returned 1 exit status
>
> make[1]: *** [scilab-bin] Error 1
>
> make[1]: Leaving directory 
> `/work/ADM/hpc/leboucl/2017-SUPPORT/SCILAB/SOURCE/scilab-5.5.2'
>
> make: *** [all-recursive] Error 1
>
> Do you have any idea about what is missing to find the symbol dgeqpf_ 
> and zgeqpf_ ? In which library should I find them?
>
> Thanks,
>
> Lise
>
>
>
> _______________________________________________
> dev mailing list
> dev at lists.scilab.org
> http://lists.scilab.org/mailman/listinfo/dev

-- 
Paul BIGNIER
Development engineer
-----------------------------------------------------------
Scilab Enterprises
143bis rue Yves Le Coz - 78000 Versailles, France
Phone: +33.1.80.77.04.68
http://www.scilab-enterprises.com

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